VintherLab publications

Sherwood AV, Rivera-Rangel LR, Ryberg LA, Larsen HS, Anker KM, Costa R, Vågbø CB, Jakljevič E, Pham LV, Fernandez-Antunez C, Indrisiunaite G, Podolska-Charlery A, Grothen JEN, Langvad NW, Fossat N, Offersgaard A, Al-Chaer A, Nielsen L, Kusnierczyk A, Sølund C, Weis N, Gottwein JM, Holmbeck K, Ramirez S, Bottaro S, Bukh J, Scheel TKH & Vinther J. Hepatitis C virus RNA is 5’ capped with flavin adenine dinucleotide. Nature 619(7971), 811-818 (2023)., Read online:
Geissler AS, Fehler AO, Poulsen LD, González-Tortuero E, Kallehauge TB, Alkan F, Anthon C, Seemann SE, Rasmussen MD, Breüner A, Hjort C, Vinther J, Gorodkin J. CRISPRi screen for enhancing heterologous α-amylase yield in Bacillus subtilis. J Ind Microbiol Biotechnol 50, 1 (2023)
Fehler, AO, Kallehauge, TB, Geissler, AS, Gonzalez-Tortuero, E, Seemann, SE, Gorodkin, J & Vinther, J. Flagella disruption in Bacillus subtilis increases amylase production yield. Microb Cell Fact 21, 131 (2022).
Geissler AS, Poulsen LD, Doncheva NT, Anthon C, Seemann SE, González-Tortuero E, Breüner A, Jensen LJ, Hjort C, Vinther J & Gorodkin J. Front Microbiol 13:909493 (2022)
Geissler AS, Anthon C, Alkan F, Gonzalez-Tortuero E, Poulsen LD, Kallehauge TB, Breuner A, Seemann SE, Vinther J & Gorodkin J. BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access, Microb Genom 7, (2021).
Gawronski P, Enroth C, Kindgren P, Marquardt S, Karpinski S, Leister D, Jensen PE, Vinther J, Scharff LB. Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region, Cells 10, (2021).
Vinther J. No Evidence for N7-Methylation of Guanosine (m(7)G) in Human let-7e, Mol Cell 79, 199-200 (2020).
Enroth CH, Fehler AO, Poulsen LD, Vinther J. Excess primer degradation by Exo I improves the preparation of 3′ cDNA ligation-based sequencing libraries, Biotechniques 67, 110-116 (2019).
Enroth C, Poulsen LD, Iversen S, Kirpekar F, Albrechtsen A, Vinther J. Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing, Nucleic Acids Res, (2019).
Kielpinski LJ, Hagedorn PH, Lindow M, Vinther J. RNase H sequence preferences influence antisense oligonucleotide efficiency, Nucleic Acids Res 45, 12932-12944 (2017).
Rukov JL, Gravesen E, Mace ML, Hofman-Bang J, Vinther J, Andersen CB, Lewin E, Olgaard K. Effect of chronic uremia on the transcriptional profile of the calcified aorta analyzed by RNA sequencing, Am J Physiol Renal Physiol 310, F477-491 (2016).
Kielpinski LJ, Hagedorn PH, Lindow M, Vinther J. RNase H sequence preferences influence antisense oligonucleotide efficiency, Nucleic Acids Res 45, 12932-12944 (2017).
Rukov JL, Hagedorn PH, Hoy IB, Feng Y, Lindow M, Vinther J. Dissecting the target specificity of RNase H recruiting oligonucleotides using massively parallel reporter analysis of short RNA motifs, Nucleic Acids Res 43, 8476-8487 (2015).
Poulsen LD, Kielpinski LJ, Salama SR, Krogh A, Vinther J. SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data, RNA 21, 1042-1052 (2015).
Kielpinski LJ, Vinther J. Massive parallel-sequencing-based hydroxyl radical probing of RNA accessibility, Nucleic Acids Res 42, e70 (2014).
Rukov JL, Vinther J, Shomron N. Pharmacogenomics genes show varying perceptibility to microRNA regulation, Pharmacogenet Genomics 21, 251-262 (2011).
Rosenstierne MW, Vinther J, Mittler G, Larsen L, Mann M, Norrild B. Conserved CPEs in the p53 3′ untranslated region influence mRNA stability and protein synthesis, Anticancer Res 28, 2553-2559 (2008).
Glahder JA, Kristiansen K, Durand M, Vinther J, Norrild B. The early noncoding region of human papillomavirus type 16 is regulated by cytoplasmic polyadenylation factors, Virus Res 149, 217-223 (2010).
Irimia M, Rukov JL, Penny D, Vinther J, Garcia-Fernandez J, Roy SW. Origin of introns by ‘intronization’ of exonic sequences, Trends Genet 24, 378-381 (2008).
Gardner PP, Vinther J. Mutation of miRNA target sequences during human evolution, Trends Genet 24, 262-265 (2008).
Boyerinas B, Park SM, Shomron N, Hedegaard MM, Vinther J, Andersen JS, Feig C, Xu J, Burge CB, Peter ME. Identification of let-7-regulated oncofetal genes, Cancer Res 68, 2587-2591 (2008).
Weile C, Gardner PP, Hedegaard MM, Vinther J. Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes, BMC Genomics 8, 244 (2007).
Rukov JL, Irimia M, Mork S, Lund VK, Vinther J, Arctander P. High qualitative and quantitative conservation of alternative splicing in Caenorhabditis elegans and Caenorhabditis briggsae, Mol Biol Evol 24, 909-917 (2007).
Vinther J, Hedegaard MM, Gardner PP, Andersen JS, Arctander P. Identification of miRNA targets with stable isotope labeling by amino acids in cell culture, Nucleic Acids Res 34, e107 (2006).
Vinther J, Rosenstierne MW, Kristiansen K, Norrild B. The 3′ region of human papillomavirus type 16 early mRNAs decrease expression, BMC Infect Dis 5, 83 (2005).
Rosenstierne MW, Vinther J, Hansen CN, Prydsoe M, Norrild B. Identification and characterization of a cluster of transcription start sites located in the E6 ORF of human papillomavirus type 16, J Gen Virol 84, 2909-2920 (2003).
Glahder JA, Hansen CN, Vinther J, Madsen BS, Norrild B. A promoter within the E6 ORF of human papillomavirus type 16 contributes to the expression of the E7 oncoprotein from a monocistronic mRNA, J Gen Virol 84, 3429-3441 (2003).
Vinther J, Norrild B. Clearance of cervical human papillomavirus infections, Int J Cancer 104, 255-256 (2003).